Cohort

Overview

Cohort data model hosts information about any cohort.

Summary

Field	Create	Update	Unique	Required
id
uuid
type
creationDate
modificationDate
description
samples
numSamples
release
status
internal
attributes

Data Model

Cohort

You can find the Java code here.

Field	Description
id String	Object ID is a mandatory parameter when creating a new one, this ID cannot be changed at the moment.
uuid String	Unique 32-character identifier assigned automatically by OpenCGA.
type CohortType	Cohort type that can have the values CASE_CONTROL, CASE_SET, CONTROL_SET, PAIRED, PAIRED_TUMOR, AGGREGATE, TIME_SERIES, FAMILY, TRIO and COLLECTION.
creationDate String	Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was first registered.
modificationDate String since: 1.0	Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was last modified.
description String	Users may provide a description for the entry.
samples List<Sample>	List of cohort samples.
numSamples int	Number of samples.
release int	An integer describing the current data release.
status Status	Object to set a custom status.
internal CohortInternal	Internal field for manage the object.
attributes Map<String,Object>	You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

CohortInternal

You can find the Java code here.

Field	Description
status InternalStatus	Status of the internal object.
registrationDate String	Registration date of the internal object.
lastModified String	Date of the last modification of the internal object.

Status

You can find the Java code here.

InternalStatus

You can find the Java code here.