Individual
Last updated
Last updated
Individual data model hosts information about any indvidual.
| Field | Create | Update | Unique | Required |
|---|---|---|---|---|
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
You can find the Java code here.
| Field | Description |
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| Field | Description |
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| Field | Description |
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| Field | Description |
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| Field | Description |
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| Field | Description |
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| Field | Description |
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| Field | Description |
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id String
Individual ID in the study, this must be unique in the study but can be repeated in different studies. This is a mandatory parameter when creating a new Individual, this ID cannot be changed at the moment.
uuid String
Unique 32-character identifier assigned automatically by OpenCGA.
name String
Name of the individual.
father Individual
Father of the individual.
mother Individual
Mother of the individual.
familyIds List<String>
List of ids of the family members.
location Location
Location of the individual.
qualityControl IndividualQualityControl
Contains different metrics to evaluate the quality of the individual.
Sex of the individual.
karyotypicSex KaryotypicSex
Karyotypic sex of the individual.
ethnicity OntologyTermAnnotation
Ethnicity of the individual.
ethnicity IndividualPopulation
Ethnicity of the individual.
dateOfBirth String
Date of birth of the individual.
creationDate String since: 1.0
Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was first registered.
modificationDate String since: 1.0
Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was last modified.
lifeStatus LifeStatus
Life status of the of the individual ALIVE, ABORTED, DECEASED, UNBORN, STILLBORN, MISCARRIAGE, UNKNOWN.
phenotypes List<Phenotype>
List of phenotypes .
disorders List<Disorder>
List of the individual disorders.
samples List<Sample>
List of the individual samples.
parentalConsanguinity boolean
Indicates the parental consanguinity is true or false.
status Status since: 2.0
Object to set a custom status.
internal IndividualInternal since: 2.0
Internal field for manage the object.
attributes Map<String,Object> since: 1.0
You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.
release int
An integer describing the current data release.
version int
Autoincremental version assigned to the registered entry. By default, updates does not create new versions. To enable versioning, users must set the incVersion flag from the /update web service when updating the document.
address String
Location address.
postalCode String
Location postal code.
city String
Location city.
state String
Location state.
country String
Location country.
id String
Id to identify the object
name String
Object name
description String
Users may provide a description for the entry.
source String
Ontology source