Sample | OpenCGA

Overview Installation Using OpenCGA

Overview

Sample data model hosts information about any biological material, normally extracted from an Individual, that is used for a particular analysis. This is the main data model, it stores the most basic and important information.

Summary

Field

Create

Update

Unique

Required

Data Model

Sample

You can find the Java code here.

SampleCollection

You can find the Java code here.

Status

You can find the Java code here.

SampleProcessing

You can find the Java code here.

SampleInternal

You can find the Java code here.

SampleQualityControl

You can find the Java code here.

Phenotype

You can find the Java code here.

ExternalSource

You can find the Java code here.

ClinicalComment

You can find the Java code here.

RgaIndex

You can find the Java code here.

InternalStatus

You can find the Java code here.

OntologyTermAnnotation

You can find the Java code here.

SampleVariantQualityControlMetrics

You can find the Java code here.

GenomePlot

You can find the Java code here.

SampleQcVariantStats

You can find the Java code here.

Signature

You can find the Java code here.

GenomePlotConfig

You can find the Java code here.

SignatureFitting

You can find the Java code here.

GenomeContextCount

You can find the Java code here.

GenomePlotTrack

You can find the Java code here.