OpenCGA
OverviewInstallationUsing OpenCGA
v2.2
v2.2
  • Home
  • Overview
    • Features
    • Architecture Diagram
    • Security
    • Metadata and Clinical Data
    • Data Models
      • Sample
      • Individual
    • Alignment and Coverage
    • Variant Query and Analysis
    • Clinical Data Analysis
    • Running Analysis
    • Scalability and Performance
    • Sizing OpenCGA
  • OpenCGA Architecture
    • Catalog
    • Alignment and Coverage
    • Variant Storage Engine
      • Variant Data Model
    • Clinical Analysis
    • Analysis Framework
  • Data Models
    • User
    • Project
    • Study
    • File
    • Sample
    • Individual
    • Family
    • Cohort
    • Job
    • Clinical Analysis
  • Case Studies
    • Genomics England Research
    • Microsoft Azure
  • User Manual
    • Installation
      • Kubernetes Cluster
        • Azure
        • Configuration
      • On-Premise HPC Cluster
        • Server Configuration
        • Getting OpenCGA
        • Choosing Variant Storage Engine
        • Configuration
      • Running Docker
    • Login
    • Using OpenCGA
      • REST Web Service API
      • IVA Web App
      • Client Libraries
        • pyopencga - Python Library
        • opencgaR - R library
        • Java
        • JavaScript
      • Command Line
        • Configuration
        • Files
      • Public Demo
    • Managing Data
      • Working with Projects and Studies
      • Loading of VCF files
      • Create Projects and Studies
      • Load VCF Files to a Study
      • Working with Files
      • Sharing and Permissions
        • Users and Groups
        • Study ACLs
      • Population of metadata
        • Data Versioning
        • Adding Custom Metadata
    • Alignment Engine
      • BAM Index
      • Alignment Read Query
      • Working with Coverage
      • Alignment Analysis
    • Variant Storage Engine
      • Variant Query
      • Variant Aggregation Stats
      • Variant Analysis
    • Clinical Genomics
      • Clinical Interpretation
      • Clinical Analysis
    • Using JupyterLab
    • Administrator
      • User Management
      • Templates / Manifest
  • About
    • Roadmap
    • Release Notes
    • Community
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  1. User Manual

Managing Data

PreviousPublic DemoNextWorking with Projects and Studies

Last updated 3 years ago

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This section provides instructions on how data is managed (loaded, updated, removed) in OpenCGA.

  1. Working with Projects and Studies

  2. Loading of VCF files

Working with metadata
Controlling access and setting permissions
Data versioning