Cohort
Overview
Cohort data model hosts information about any cohort.
Summary
id
uuid
type
creationDate
modificationDate
description
samples
numSamples
release
status
internal
attributes
Data Model
Cohort
You can find the Java code here.
id String
Object ID is a mandatory parameter when creating a new one, this ID cannot be changed at the moment.
uuid String
Unique 32-character identifier assigned automatically by OpenCGA.
type CohortType
Cohort type that can have the values CASE_CONTROL, CASE_SET, CONTROL_SET, PAIRED, PAIRED_TUMOR, AGGREGATE, TIME_SERIES, FAMILY, TRIO and COLLECTION.
creationDate String
Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was first registered.
modificationDate String since: 1.0
Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was last modified.
description String
Users may provide a description for the entry.
samples List<Sample>
List of cohort samples.
numSamples int
Number of samples.
release int
An integer describing the current data release.
status Status
Object to set a custom status.
internal CohortInternal
Internal field for manage the object.
attributes Map<String,Object>
You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.
CohortInternal
You can find the Java code here.
status InternalStatus
Status of the internal object.
registrationDate String
Registration date of the internal object.
lastModified String
Date of the last modification of the internal object.
Status
You can find the Java code here.
InternalStatus
You can find the Java code here.
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