OpenCGA
OverviewInstallationUsing OpenCGA
v2.2
v2.2
  • Home
  • Overview
    • Features
    • Architecture Diagram
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    • Metadata and Clinical Data
    • Data Models
      • Sample
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    • Variant Query and Analysis
    • Clinical Data Analysis
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    • Scalability and Performance
    • Sizing OpenCGA
  • OpenCGA Architecture
    • Catalog
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    • Variant Storage Engine
      • Variant Data Model
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  • Data Models
    • User
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    • File
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      • Kubernetes Cluster
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        • Choosing Variant Storage Engine
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      • REST Web Service API
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        • pyopencga - Python Library
        • opencgaR - R library
        • Java
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      • Command Line
        • Configuration
        • Files
      • Public Demo
    • Managing Data
      • Working with Projects and Studies
      • Loading of VCF files
      • Create Projects and Studies
      • Load VCF Files to a Study
      • Working with Files
      • Sharing and Permissions
        • Users and Groups
        • Study ACLs
      • Population of metadata
        • Data Versioning
        • Adding Custom Metadata
    • Alignment Engine
      • BAM Index
      • Alignment Read Query
      • Working with Coverage
      • Alignment Analysis
    • Variant Storage Engine
      • Variant Query
      • Variant Aggregation Stats
      • Variant Analysis
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      • Clinical Interpretation
      • Clinical Analysis
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On this page
  • Overview
  • Summary
  • Data Model
  • Project
  • ProjectOrganism
  • ProjectInternal
  • InternalStatus

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  1. Data Models

Project

Overview

Project data model hosts information about any project.

Summary

Field
Create
Update
Unique
Required

id

uuid

name

fqn

creationDate

modificationDate

description

organism

currentRelease

studies

release

attributes

Data Model

Project

Field
Description

id String

Object ID is a mandatory parameter when creating a new one, this ID cannot be changed at the moment.

uuid String

Unique 32-character identifier assigned automatically by OpenCGA.

name String

Name of the .

fqn String

Full Qualified Name (user@projectId).

creationDate String

Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was first registered.

modificationDate String since: 1.0

Autogenerated date following the format YYYYMMDDhhmmss containing the date when the entry was last modified.

description String

Users may provide a description for the entry.

Organism to which the project belongs.

currentRelease int

An integer describing the current data release.

Project study list.

An integer describing the current data release.

attributes Map<String,Object>

You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

ProjectOrganism

ProjectInternal

Field
Description

datastores Datastores

Default value is VARIANT.

cellbase CellBaseConfiguration

Cellbase configuration.

Status of the internal object.

registrationDate String

Registration date of the internal object.

lastModified String

Date of the last modification of the internal object.

InternalStatus

PreviousUserNextStudy

Last updated 2 years ago

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You can find the Java code .

organism

studies List<>

release

You can find the Java code .

You can find the Java code .

status

You can find the Java code .

here
here
here
here
ProjectOrganism
Study
ProjectInternal
InternalStatus