Project
Overview
Created by jacobo on 11/09/14.
Summary
Field | create | update | unique | required |
id | ||||
name | ||||
fqn | ||||
description | ||||
organism | ||||
currentRelease | ||||
studies | ||||
attributes | ||||
uuid | ||||
creationDate | ||||
modificationDate | ||||
internal |
Data Model
Project
You can find the Java code here.
Field | Description |
id String | Project ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique |
uuid String | Global unique ID at the whole OpenCGA installation. This is automatically created during the Project creation and cannot be changed.Tags: internal, unique, immutable |
name String | |
fqn String | Full Qualified Name (user@projectId). |
creationDate String | String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal |
modificationDate String | String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal |
description String | An string to describe the properties of the sample. |
organism ProjectOrganism | |
currentRelease int | |
studies List<Study> | |
internal ProjectInternal | An object describing the internal information of the Project. This is managed by OpenCGA.Tags: internal |
attributes Map<Object,String> | You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes. |
Study
You can find the Java code here.
Field | Description |
id String | Study ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique |
uuid String | Global unique ID at the whole OpenCGA installation. This is automatically created during the study creation and cannot be changed.Tags: internal, unique, immutable |
name String | |
alias String | |
creationDate String | String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal |
modificationDate String | String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal |
description String | An string to describe the properties of the sample. |
size long | |
fqn String | |
notification StudyNotification | |
groups List<Group> | A List with related groups. |
files List<File> | A List with related files. |
jobs List<Job> | A List with related jobs. |
individuals List<Individual> | A List with related individuals. |
families List<Family> | A List with related families. |
samples List<Sample> | A List with related samples. |
cohorts List<Cohort> | A List with related cohorts. |
panels List<org.opencb.opencga.core.models.panel.Panel> | A List with related panels. |
clinicalAnalyses List<ClinicalAnalysis> | A List with related clinicalAnalyses. |
variableSets List<VariableSet> | A List with related variableSets. |
permissionRules Map<ListPermissionRule,Enums.Entity> | |
uri URI | |
release int | |
status CustomStatus | An object describing the status of the Sample. |
internal StudyInternal | An object describing the internal information of the Sample. This is managed by OpenCGA.Tags: internal |
attributes Map<Object,String> | You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes. |
ProjectOrganism
You can find the Java code here.
Field | Description |
scientificName String | |
commonName String | |
assembly String |
SampleInternal
You can find the Java code here.
ProjectInternal
You can find the Java code here.
Field | Description |
datastores Datastores | |
cellbase CellBaseConfiguration | |
status Status |
CohortInternal
You can find the Java code here.
Field | Description |
status CohortStatus |
StudyInternal
You can find the Java code here.
Field | Description |
status Status | |
configuration StudyConfiguration |
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