Project
Overview
Created by jacobo on 11/09/14.
Summary
Field
create
update
unique
required
id
name
fqn
description
organism
currentRelease
studies
attributes
uuid
creationDate
modificationDate
internal
Data Model
Project
You can find the Java code here.
Field
Description
id String
Project ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuid String
Global unique ID at the whole OpenCGA installation. This is automatically created during the Project creation and cannot be changed.Tags: internal, unique, immutable
name String
fqn String
Full Qualified Name (user@projectId).
creationDate String
String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal
modificationDate String
String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal
description String
An string to describe the properties of the sample.
organism ProjectOrganism
currentRelease int
studies List<Study>
internal ProjectInternal
An object describing the internal information of the Project. This is managed by OpenCGA.Tags: internal
attributes Map<Object,String>
You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.
Study
You can find the Java code here.
Field
Description
id String
Study ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuid String
Global unique ID at the whole OpenCGA installation. This is automatically created during the study creation and cannot be changed.Tags: internal, unique, immutable
name String
alias String
creationDate String
String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal
modificationDate String
String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal
description String
An string to describe the properties of the sample.
size long
fqn String
notification StudyNotification
groups List<Group>
A List with related groups.
files List<File>
A List with related files.
jobs List<Job>
A List with related jobs.
individuals List<Individual>
A List with related individuals.
families List<Family>
A List with related families.
samples List<Sample>
A List with related samples.
cohorts List<Cohort>
A List with related cohorts.
panels List<org.opencb.opencga.core.models.panel.Panel>
A List with related panels.
clinicalAnalyses List<ClinicalAnalysis>
A List with related clinicalAnalyses.
variableSets List<VariableSet>
A List with related variableSets.
permissionRules Map<ListPermissionRule,Enums.Entity>
uri URI
release int
status CustomStatus
An object describing the status of the Sample.
internal StudyInternal
An object describing the internal information of the Sample. This is managed by OpenCGA.Tags: internal
attributes Map<Object,String>
You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.
ProjectOrganism
You can find the Java code here.
Field
Description
scientificName String
commonName String
assembly String
SampleInternal
You can find the Java code here.
ProjectInternal
You can find the Java code here.
CohortInternal
You can find the Java code here.
Field
Description
status CohortStatus
StudyInternal
You can find the Java code here.
Last updated
