Project

Overview

Created by jacobo on 11/09/14.

Summary

Field

create

update

unique

required

id

name

fqn

description

organism

currentRelease

studies

attributes

uuid

creationDate

modificationDate

internal

Data Model

Project

You can find the Java code here.

Field

Description

id String

Project ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique

uuid String

Global unique ID at the whole OpenCGA installation. This is automatically created during the Project creation and cannot be changed.Tags: internal, unique, immutable

name String

fqn String

Full Qualified Name (user@projectId).

creationDate String

String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal

modificationDate String

String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal

description String

An string to describe the properties of the sample.

organism ProjectOrganism

currentRelease int

studies List<Study>

internal ProjectInternal

An object describing the internal information of the Project. This is managed by OpenCGA.Tags: internal

attributes Map<Object,String>

You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

Study

You can find the Java code here.

Field

Description

id String

Study ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique

uuid String

Global unique ID at the whole OpenCGA installation. This is automatically created during the study creation and cannot be changed.Tags: internal, unique, immutable

name String

alias String

creationDate String

String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal

modificationDate String

String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal

description String

An string to describe the properties of the sample.

size long

fqn String

notification StudyNotification

groups List<Group>

A List with related groups.

files List<File>

A List with related files.

jobs List<Job>

A List with related jobs.

individuals List<Individual>

A List with related individuals.

families List<Family>

A List with related families.

samples List<Sample>

A List with related samples.

cohorts List<Cohort>

A List with related cohorts.

panels List<org.opencb.opencga.core.models.panel.Panel>

A List with related panels.

clinicalAnalyses List<ClinicalAnalysis>

A List with related clinicalAnalyses.

variableSets List<VariableSet>

A List with related variableSets.

permissionRules Map<ListPermissionRule,Enums.Entity>

uri URI

release int

status CustomStatus

An object describing the status of the Sample.

internal StudyInternal

An object describing the internal information of the Sample. This is managed by OpenCGA.Tags: internal

attributes Map<Object,String>

You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

ProjectOrganism

You can find the Java code here.

Field

Description

scientificName String

commonName String

assembly String

SampleInternal

You can find the Java code here.

Field

Description

status Status

ProjectInternal

You can find the Java code here.

Field

Description

datastores Datastores

status Status

CohortInternal

You can find the Java code here.

Field

Description

status CohortStatus

StudyInternal

You can find the Java code here.

Field

Description

status Status

configuration StudyConfiguration

Last updated