File
Overview
Created by jacobo on 11/09/14.
Summary
Field
create
update
unique
required
id
name
type
format
bioformat
checksum
uri
path
description
external
size
software
experiment
sampleIds
jobId
tags
relatedFiles
qualityControl
stats
status
attributes
uuid
release
creationDate
modificationDate
internal
Data Model
File
You can find the Java code here.
Field
Description
id String
File ID is a mandatory parameter when creating a new File, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuid String
Global unique ID at the whole OpenCGA installation. This is automatically created during the File creation and cannot be changed.Tags: internal, unique, immutable
name String
type File.Type
Formats: file, folder, index.
format File.Format
Formats: txt, executable, image, ...
bioformat File.Bioformat
BAM, VCF, ...
checksum String
uri URI
path String
release int
An integer describing the current data release.Tags: internal
creationDate String
String representing when the File was created, this is automatically set by OpenCGA.Tags: internal
modificationDate String
String representing when was the last time the File was modified, this is automatically set by OpenCGA.Tags: internal
description String
An string to describe the properties of the File.
external boolean
size long
software Software
experiment FileExperiment
sampleIds List<String>
jobId String
tags List<String>
relatedFiles List<FileRelatedFile>
qualityControl FileQualityControl
stats Map<Object,String>
status CustomStatus
An object describing the status of the File.
internal FileInternal
An object describing the internal information of the File. This is managed by OpenCGA.Tags: internal
attributes Map<Object,String>
You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.
FileRelatedFile
You can find the Java code here.
SampleInternal
You can find the Java code here.
IndividualInternal
You can find the Java code here.
Field
Description
status Status
FamilyInternal
You can find the Java code here.
Field
Description
status FamilyStatus
FileInternal
You can find the Java code here.
Field
Description
status FileStatus
index FileIndex
sampleMap Map<String>
missingSamples MissingSamples
JobInternal
You can find the Java code here.
InterpretationInternal
You can find the Java code here.
Field
Description
status InterpretationStatus
ProjectInternal
You can find the Java code here.
CohortInternal
You can find the Java code here.
Field
Description
status CohortStatus
ClinicalAnalysisInternal
You can find the Java code here.
Field
Description
status ClinicalAnalysisStatus
StudyInternal
You can find the Java code here.
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