Sample data model hosts information about any biological material, normally extracted from an Individual, that is used for a particular analysis. This is the main data model, it stores the most basic and important information.
Sample ID in the study, this must be unique in the study but can be repeated in different studies. This is a mandatory parameter
when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuidString
Global unique ID at the whole OpenCGA installation. This is automatically created during the sample creation and cannot be changed.Tags: internal, unique, immutable
Contains different metrics to evaluate the quality of the sample.Note: The sample collection is a list of samples</br>More info at: ZetaGenomics
releaseint
An integer describing the current data release.Tags: internal
versionint
An integer describing the current version.Tags: internal
creationDateString
String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal
modificationDateString
String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal
descriptionString
An string to describe the properties of the sample.
somaticboolean
Indicates if the sample is somatic or germline (default)
phenotypes
List<Phenotype>
A List with related phenotypes.
individualIdString
A reference to the Individual containing this sample. Notice that samples can exist without and Individual ID, this field is not
mandatory..More info at: ZetaGenomics
fileIds
List<String>
Deprecated
List of File ID containing this sample, eg BAM, VCF, QC images, ...