Family

Overview

Created by pfurio on 02/05/17.

Summary

Field

create

update

unique

required

id

name

members

phenotypes

disorders

qualityControl

expectedSize

description

status

roles

attributes

uuid

creationDate

modificationDate

release

version

internal

Data Model

Family

You can find the Java code here.

Field

Description

id String

Family is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique

uuid String

Global unique ID at the whole OpenCGA installation. This is automatically created during the Family creation and cannot be changed.Tags: internal, unique, immutable

name String

phenotypes List<Phenotype>

disorders List<Disorder>

creationDate String

String representing when the Family was created, this is automatically set by OpenCGA.Tags: internal

modificationDate String

String representing when was the last time the Family was modified, this is automatically set by OpenCGA.Tags: internal

expectedSize int

description String

An string to describe the properties of the Family.

release int

An integer describing the current data release.Tags: internal

version int

An integer describing the current version.Tags: internal

An object describing the status of the Family.

An object describing the internal information of the Family. This is managed by OpenCGA.Tags: internal

roles Map<MapString,String,FamiliarRelationship>

attributes Map<Object,String>

You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

Individual

You can find the Java code here.

Field

Description

id String

Individual ID in the study, this must be unique in the study but can be repeated in different studies. This is a mandatory parameter when creating a new Individual, this ID cannot be changed at the moment.Tags: required, immutable, unique

uuid String

Global unique ID at the whole OpenCGA installation. This is automatically created during the sample creation and cannot be changed.Tags: internal, unique, immutable

name String

sex Sex

karyotypicSex KaryotypicSex

ethnicity String

dateOfBirth String

release int

An integer describing the current data release.Tags: internal

version int

An integer describing the current version.Tags: internal

creationDate String

String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal

modificationDate String

String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal

lifeStatus LifeStatus

phenotypes List<Phenotype>

A List with related phenotypes.

disorders List<Disorder>

A List with related disorders.

A List with related samples.

parentalConsanguinity boolean

attributes Map<Object,String>

You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

SampleInternal

You can find the Java code here.

Field

Description

IndividualInternal

You can find the Java code here.

Field

Description

FamilyInternal

You can find the Java code here.

Field

Description

FileInternal

You can find the Java code here.

Field

Description

sampleMap Map<String>

JobInternal

You can find the Java code here.

Field

Description

events List<Event>

InterpretationInternal

You can find the Java code here.

Field

Description

ProjectInternal

You can find the Java code here.

Field

Description

CohortInternal

You can find the Java code here.

Field

Description

ClinicalAnalysisInternal

You can find the Java code here.

Field

Description

UserInternal

You can find the Java code here.

Field

Description

StudyInternal

You can find the Java code here.

Field

Description

Last updated