Job

Overview

Created by jacobo on 11/09/14.

Summary

Field

create

update

unique

required

id

description

tool

userId

commandLine

params

priority

outDir

input

output

tags

dependsOn

execution

stdout

stderr

visited

OPENCGA_PARENTS

study

attributes

uuid

creationDate

modificationDate

internal

release

Data Model

Job

You can find the Java code here.

Field

Description

id String

Job ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique

uuid String

Global unique ID at the whole OpenCGA installation. This is automatically created during the sample creation and cannot be changed.Tags: internal, unique, immutable

description String

An string to describe the properties of the Job.

userId String

commandLine String

params Map<Object,String>

creationDate String

String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal

modificationDate String

String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal

An object describing the internal information of the Sample. This is managed by OpenCGA.Tags: internal

tags List<String>

visited boolean

OPENCGA_PARENTS String

release int

An integer describing the current data release.Tags: internal

attributes Map<Object,String>

JobStudyParam

You can find the Java code here.

Field

Description

id String

others List<String>

File

You can find the Java code here.

Field

Description

id String

File ID is a mandatory parameter when creating a new File, this ID cannot be changed at the moment.Tags: required, immutable, unique

uuid String

Global unique ID at the whole OpenCGA installation. This is automatically created during the File creation and cannot be changed.Tags: internal, unique, immutable

name String

Formats: file, folder, index.

Formats: txt, executable, image, ...

BAM, VCF, ...

checksum String

uri URI

path String

release int

An integer describing the current data release.Tags: internal

creationDate String

String representing when the File was created, this is automatically set by OpenCGA.Tags: internal

modificationDate String

String representing when was the last time the File was modified, this is automatically set by OpenCGA.Tags: internal

description String

An string to describe the properties of the File.

external boolean

size long

software Software

sampleIds List<String>

jobId String

tags List<String>

stats Map<Object,String>

An object describing the status of the File.

An object describing the internal information of the File. This is managed by OpenCGA.Tags: internal

attributes Map<Object,String>

You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

ExecutionResult

You can find the Java code here.

Field

Description

id String

start Date>

end Date>

externalFiles List<URI>

events List<Event>

attributes ObjectMap

Enum Enums.Priority

Enumeration class. You can find the Java code here.

Field

Description

URGENT

HIGH

MEDIUM

LOW

UNKNOWN

value

ToolInfo

You can find the Java code here.

Field

Description

id String

description String

SampleInternal

You can find the Java code here.

Field

Description

FileInternal

You can find the Java code here.

Field

Description

sampleMap Map<String>

JobInternal

You can find the Java code here.

Field

Description

events List<Event>

ProjectInternal

You can find the Java code here.

Field

Description

CohortInternal

You can find the Java code here.

Field

Description

StudyInternal

You can find the Java code here.

Field

Description

Last updated