Job
Overview
Created by jacobo on 11/09/14.
Summary
Field
create
update
unique
required
id
description
tool
userId
commandLine
params
priority
outDir
input
output
tags
dependsOn
execution
stdout
stderr
visited
OPENCGA_PARENTS
study
attributes
uuid
creationDate
modificationDate
internal
release
Data Model
Job
You can find the Java code here.
Field
Description
id String
Job ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuid String
Global unique ID at the whole OpenCGA installation. This is automatically created during the sample creation and cannot be changed.Tags: internal, unique, immutable
description String
An string to describe the properties of the Job.
userId String
commandLine String
params Map<Object,String>
creationDate String
String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal
modificationDate String
String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal
An object describing the internal information of the Sample. This is managed by OpenCGA.Tags: internal
tags List<String>
visited boolean
OPENCGA_PARENTS String
release int
An integer describing the current data release.Tags: internal
attributes Map<Object,String>
JobStudyParam
You can find the Java code here.
Field
Description
id String
others List<String>
File
You can find the Java code here.
Field
Description
id String
File ID is a mandatory parameter when creating a new File, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuid String
Global unique ID at the whole OpenCGA installation. This is automatically created during the File creation and cannot be changed.Tags: internal, unique, immutable
name String
Formats: file, folder, index.
Formats: txt, executable, image, ...
BAM, VCF, ...
checksum String
uri URI
path String
release int
An integer describing the current data release.Tags: internal
creationDate String
String representing when the File was created, this is automatically set by OpenCGA.Tags: internal
modificationDate String
String representing when was the last time the File was modified, this is automatically set by OpenCGA.Tags: internal
description String
An string to describe the properties of the File.
external boolean
size long
software Software
sampleIds List<String>
jobId String
tags List<String>
stats Map<Object,String>
An object describing the status of the File.
An object describing the internal information of the File. This is managed by OpenCGA.Tags: internal
attributes Map<Object,String>
You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.
ExecutionResult
You can find the Java code here.
Field
Description
id String
start Date>
end Date>
externalFiles List<URI>
events List<Event>
attributes ObjectMap
Enum Enums.Priority
Enumeration class. You can find the Java code here.
Field
Description
URGENT
HIGH
MEDIUM
LOW
UNKNOWN
value
ToolInfo
You can find the Java code here.
Field
Description
id String
description String
SampleInternal
You can find the Java code here.
Field
Description
FileInternal
You can find the Java code here.
Field
Description
sampleMap Map<String>
JobInternal
You can find the Java code here.
Field
Description
events List<Event>
ProjectInternal
You can find the Java code here.
Field
Description
CohortInternal
You can find the Java code here.
Field
Description
StudyInternal
You can find the Java code here.
Field
Description
Last updated
