Project

Overview

Created by jacobo on 11/09/14.

Summary

Field	create	update	unique	required
id
name
fqn
description
organism
currentRelease
studies
attributes
uuid
creationDate
modificationDate
internal

Data Model

Project

You can find the Java code here.

Field	Description
id String	Project ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuid String	Global unique ID at the whole OpenCGA installation. This is automatically created during the Project creation and cannot be changed.Tags: internal, unique, immutable
name String
fqn String	Full Qualified Name (user@projectId).
creationDate String	String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal
modificationDate String	String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal
description String	An string to describe the properties of the sample.
organism ProjectOrganism
currentRelease int
studies List<Study>
internal ProjectInternal	An object describing the internal information of the Project. This is managed by OpenCGA.Tags: internal
attributes Map<Object,String>	You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

Study

You can find the Java code here.

Field	Description
id String	Study ID is a mandatory parameter when creating a new sample, this ID cannot be changed at the moment.Tags: required, immutable, unique
uuid String	Global unique ID at the whole OpenCGA installation. This is automatically created during the study creation and cannot be changed.Tags: internal, unique, immutable
name String
alias String
creationDate String	String representing when the sample was created, this is automatically set by OpenCGA.Tags: internal
modificationDate String	String representing when was the last time the sample was modified, this is automatically set by OpenCGA.Tags: internal
description String	An string to describe the properties of the sample.
size long
fqn String
notification StudyNotification
groups List<Group>	A List with related groups.
files List<File>	A List with related files.
jobs List<Job>	A List with related jobs.
individuals List<Individual>	A List with related individuals.
families List<Family>	A List with related families.
samples List<Sample>	A List with related samples.
cohorts List<Cohort>	A List with related cohorts.
panels List<org.opencb.opencga.core.models.panel.Panel>	A List with related panels.
clinicalAnalyses List<ClinicalAnalysis>	A List with related clinicalAnalyses.
variableSets List<VariableSet>	A List with related variableSets.
permissionRules Map<ListPermissionRule,Enums.Entity>
uri URI
release int
status CustomStatus	An object describing the status of the Sample.
internal StudyInternal	An object describing the internal information of the Sample. This is managed by OpenCGA.Tags: internal
attributes Map<Object,String>	You can use this field to store any other information, keep in mind this is not indexed so you cannot search by attributes.

ProjectOrganism

You can find the Java code here.

Field	Description
scientificName String
commonName String
assembly String

SampleInternal

You can find the Java code here.

Field	Description
status Status
rga RgaIndex

ProjectInternal

You can find the Java code here.

Field	Description
datastores Datastores
cellbase CellBaseConfiguration
status Status

CohortInternal

You can find the Java code here.

Field	Description
status CohortStatus

StudyInternal

You can find the Java code here.

Field	Description
status Status
configuration StudyConfiguration